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Center for Theoretical Biological Physics

Rice University researchers have modelled a key mechanism by which DNA replicates. The study could help identify new targets to treat disease.

Rice models moving ‘washers’ that help DNA replicate

August 9, 2022

Rice researchers model a key mechanism by which DNA replicates. The study could help identify new targets to treat disease.

Fluorescent Bacillus subtilis viewed with a confocal microscope

Rice bioengineers are shining light on bacterial stress

May 23, 2022

Rice bioengineers are ready to shine a lot of light on bacteria’s genetic response to stress.

A theoretical framework by Rice University scientists shows how to increase the odds of identifying cancer-causing mutations before tumors take hold. They demonstrate that only a few energetically favorable pathways are likely to lead to cancer.

Rice chemists skew the odds to prevent cancer

May 17, 2022

A theoretical framework by Rice University scientists shows how to increase the odds of identifying cancer-causing mutations before tumors take hold. They demonstrate that only a few energetically favorable pathways are likely to lead to cancer.

Positively charged holes that propagate at catalytic sites can spread out and trigger catalysis in neighboring sectors, according to a theory developed at Rice University and the Indian Institute of Science Education and Research, Pune. (Credit: Illustration by Bhawakshi Punia and Srabanti Chaudhury/IISER Pune)

Migrating holes help catalysts be productive

January 10, 2022

A theoretical model suggests electron holes that propagate at active sites on a catalyst migrate, triggering other sites that continue the process.

False-color image of myxobacterial colonies reminiscent of "The Starry Night."

Swirling bacteria mimic Van Gogh’s ‘The Starry Night’

December 13, 2021

Scientists discovered a way to transform millions of predatory bacteria into swirling flash mobs reminiscent of painter Vincent Van Gogh’s “The Starry Night” as the unexpected result of experiments on a genetic circuit the creatures use to discern friend from foe.

Prions, aggregates implicated in neurological diseases, may also have an important function in helping regulate the transcription of messenger RNA in memory formation.

Prions may channel RNA’s messages

November 15, 2021

Prions, aggregates implicated in neurological diseases, may also have an important function in helping regulate the transcription of messenger RNA in memory formation.

A Living Systems Network

NSF extends Physics of Living Systems network at Rice

September 27, 2021

The NSF awards nearly $3 million to the Center for Theoretical Biological Physics to continue its leadership role in the Physics of Living Systems graduate research network.

Using computational models and atomic force microscope experiments, researchers at the University of Houston and Rice University have identified a possible “Achilles’ heel” in the frustration of amyloid beta peptides as they dock to the fibrils that form plaques in patients with Alzheimer’s. The frustrated steps could open a window for drugs able to cap the fibril ends, preventing further aggregation. (Credit: Illustration by Yuechuan Xu/Peter Vekilov/University of Houston)

Docking peptides, slow to lock, open possible path to treat Alzheimer’s

September 13, 2021

Researchers have identified a possible “Achilles’ heel” in the frustration of amyloid beta peptides as they dock to the fibrils that form plaques in patients with Alzheimer’s disease.

Simulations by scientists at the Rice University-based Center for Theoretical Biological Physics suggest how the SARS-CoV-2 spike infects cells. The illustration shows how the spike reconfigures itself in microseconds as it goes from pre- to post-fusion with target cells. The researchers suggest their work to reveal the mechanism by which the virus spreads could lead to new strategies to defeat COVID-19.

Sim shows how COVID virus infects cells

August 31, 2021

A simulation shows the complicated mechanism by which the SARS-CoV-2 virus may infect cells, leading to COVID-19.

Video by Esteban Dodero-Rojas and Paul Whitford/Center for Theoretical Biological Physics

Rice, Rutgers developing inhalable COVID-19 vaccine spray

July 7, 2021

Scientists at Rice and Rutgers developing two COVID-19 vaccine strategies that do not require cold storage, one of which can be inhaled.

Biologists at Baylor College of Medicine, the Netherlands Cancer Institute and Rice University show in a study published in Science that the nuclear arrangement in a human cell can be turned into that typical of a fly. (Credit: Illustration by Evgeny Gromov)

Biologists construct a ‘periodic table’ for cell nuclei

May 27, 2021

A team of biologists studying the tree of life has unveiled a new classification system for cell nuclei, and discovered a method for transmuting one type of cell nucleus into another.

Amyloid

Cancer ‘guardian’ breaks bad with one switch

March 5, 2021

A mutation that replaces a single amino acid in a potent tumor-suppressing protein makes it prone to nucleating amyloid fibrils implicated in many cancers as well as neurological diseases.

3D illustration of the bacterial pathogen Mycobacterium tuberculosis.

Study could explain tuberculosis bacteria paradox

February 22, 2021

Tuberculosis bacteria have evolved to remember stressful encounters and react quickly to future stress, according to a study by computational bioengineers at Rice University and infectious disease experts at Rutgers New Jersey Medical School.

Propofol B

Study shows why anesthetic stops cell’s walkers in their tracks

January 28, 2021

Researchers detail the mechanism that allows propofol, a common anesthetic, to halt the movement of kinesin proteins that deliver cargoes to the far reaches of cells.

Atom-scale models by Rice University scientists based on those used to predict how proteins fold show a strong correlation between minimally frustrated binding sites and drug specificity. The funnel, a visual representation of the protein’s energy landscape as it folds, helps locate those frustrated sites. Such models could lead to better-designed drugs with fewer side effects. (Credit: Illustration by Mingchen Chen/Rice University)

Understanding frustration could lead to better drugs

November 23, 2020

Atom-scale models of proteins that incorporate ligands, like drug molecules, show a strong correlation between minimally frustrated binding sites and drug specificity. Such models could lead to better-designed drugs with fewer side effects.

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