HOUSTON – (Dec. 13, 2021) – Scientists discovered a way to transform millions of predatory bacteria into swirling flash mobs reminiscent of painter Vincent Van Gogh’s “The Starry Night” as the unexpected result of experiments on a genetic circuit the creatures use to discern friend from foe.
Myxococcus xanthus has been studied for decades as a model system for social cooperation and bacterial gene regulation. While studying M. xanthus mutants that overexpress two proteins the cells use to recognize close relatives, researchers from Rice University and the University of Wyoming discovered a previously unreported behavior: self-organization into circles a millimeter or more in diameter.
The research is described in a study published online in the American Society for Microbiology’s mSystems, and an image from the study will be featured in a forthcoming issue of the open-access journal.
“When you overexpress that protein, you can see these circular aggregates emerge after four hours, and by 12 hours they take up the whole (petri dish),” said study co-author Oleg Igoshin, a professor of bioengineering at Rice and senior scientist at Rice's Center for Theoretical Biological Physics .
Igoshin’s research group and the Wyoming microbiology group led by co-author Daniel Wall collaborated for five years on the study, conducting dozens of laboratory and computational experiments to uncover the genetic mechanism of the circular swarms .
M. xanthus prey on other bacteria. Lacking internal organs to digest their prey, they band together in familial packs to engulf and devour victims, which can include M. xanthus that aren’t members of the family.
About five years ago, Wall and study co-author Pengbo Cao, then a graduate student in his lab and now a postdoctoral research associate at the Georgia Institute of Technology, showed M. xanthus uses a surface receptor called TraA and a partner protein called TraB to recognize kin. When M. xanthus bumps into a close relative, the TraAB complex acts as a kind of glue, forming a sticky bond between the two. When M. xanthus runs into unrelated M. xanthus, TraAB helps poison non-kin.
While investigating the mechanism of TraAB, Wall’s team created several mutant strains, including some that overexpressed TraAB, making more of the protein than normal, and Cao noticed they had a tendency to form cell clusters within a few hours. While Wall’s team followed up with microbiological experiments, Igoshin’s group was asked if it could create a theoretical model that might explain the mystery.
“What's interesting about our theory is that the only way we see these (circular aggregates) in our simulations is when we make the cells non-reversing,” Igoshin said. “In normal wild-type cells, they go back and forth, back and forth, like a commuter train. The head becomes the tail and the tail becomes the head. And they do it every eight minutes or so.”
The model simulated M. xanthus behavior based on changes to TraAB and other signaling circuits and was developed by Igoshin and study co-authors Rajesh Balagam and Zhaoyang Zhang , who were then graduate students in his lab.
“Our first idea was maybe they're so sticky, they just can't reverse,” Igoshin said. “So we tried to see if sticky cells that normally reverse would form circular aggregates. We added a very, very strong adhesion to our simulations, and nothing happened. They didn't make circles. However, if we instead inhibited the reversals the simulations worked. Circular aggregates emerged.”
Follow-up experiments at Wyoming verified cells in the aggregates did not reverse, but that raised even more questions.
“Somehow TraAB overexpression in aggregates prevented cells from reversing,” Igoshin said. “So this was very cool for us, because this is what our model predicted. But this was also a bit puzzling and completely unexpected. Because TraAB, as far as we knew, didn't have anything to do with reversal regulation.”
A few possible explanations were ruled out with follow-up experiments. Evidence suggested TraAB stickiness could be the key.
“But how is it that adhesion suppresses the reversals?” Igoshin said. “Our idea was maybe there is some sort of contact-dependent signal between cells that suppresses the reversals. The cells are in dense groups and are in contact with others all the time, but those contacts are transient. But if TraAB overexpression really makes you sticky, your neighbor will remain your neighbor for longer, and that could trigger the signal that suppresses the reversals.”
With those changes, the model began producing patterns very similar to what Wall’s team was seeing in its experiments with engineered M. xanthus strains. To see if the model could predict a behavior that hadn’t yet been seen in experiments, Igoshin’s team simulated what would happen in mixed colonies of M. xanthus, including mixtures of two extra-sticky mutants that didn’t recognize one another as kin. The model predicted they would form large rotating swarms containing mixtures of the two strains.
The prediction was borne out in experiments by Wall’s team, and the application of false color to microscopic images of the colonies revealed M. xanthus’ pastiche of “The Starry Night.”
“Our work highlights how a social bacterium, known for rich sources of therapeutic natural products and as crop biocontrol agents, serves as a powerful model for studying emergent behaviors that also exhibit artistic beauty,” Wall said.
Additional co-authors include Govind Sahb and Kalpana Subedib of the University of Wyoming. The research was supported by the National Science Foundation (1903275, 1951025) and the National Institutes of Health (R35GM140886, R01GM101449).
Read the mSystems paper at: https://doi.org/10.1128/mSystems.00720-21 .
High-resolution IMAGES are available for download at:
CAPTION: Experimental mixture of two myxobacteria strains that overexpress different types of TraA receptors (red and green) that adhere to themselves but not each other. (Image courtesy of D. Wall/University of Wyoming)
CAPTION: Image at 10 times magnification of an experimental mixture of myxobacteria from a strain that overexpresses TraAB and adheres to itself (yellow) and a strain that is non-adhesive and non-reversing (blue). (Image courtesy of D. Wall/University of Wyoming)
CAPTION: Image at four times magnification of an experimental mixture of myxobacteria from a strain that overexpresses TraAB and adheres to itself (green) and a strain that is non-adhesive and non-reversing (red). (Image courtesy of D. Wall/University of Wyoming)
CAPTION: Oleg Igoshin (Photo by Jeff Fitlow/Rice University)
CAPTION: Dan Wall (Image courtesy of University of Wyoming)
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